#include "mothur.h"
-
+#include "mothurout.h"
+#include "command.hpp"
/***********************************************************************/
class OptionParser {
public:
OptionParser(string);
+ OptionParser(string, map<string, string>&);
~OptionParser() {}
map<string, string> getParameters();
+ bool getNameFile(vector<string>);
private:
map<string, string> parameters;
+ MothurOut* m;
};
/***********************************************************************/