it->second = m->getTaxonomyFile();
}else if (it->first == "biom") {
it->second = m->getBiomFile();
- }else if (it->first == "counttable") {
+ }else if (it->first == "count") {
it->second = m->getCountTableFile();
}else {
m->mothurOut("[ERROR]: mothur does not save a current file for " + it->first); m->mothurOutEndLine();