vector<string> setParameters();
string getCommandName() { return "normalize.shared"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Normalize.shared"; }
+ string getDescription() { return "normalize samples in a shared or relabund file"; }
+
int execute();
void help() { m->mothurOut(getHelpString()); }
int norm;
vector<string> Groups, outputNames;
- int normalize(vector<SharedRAbundVector*>&, ofstream&);
- int normalize(vector<SharedRAbundFloatVector*>&, ofstream&);
+ int normalize(vector<SharedRAbundVector*>&);
+ int normalize(vector<SharedRAbundFloatVector*>&);
int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);