added SequenceCountParser class to parse the count table by group. added count parame...

[mothur.git] / normalizesharedcommand.h

diff --git a/normalizesharedcommand.h b/normalizesharedcommand.h
index c25274119ac3c918dcfa8ef584b05bd3f9310bc9..2feb40d1bcf105a485b5790ebc3be2484a94f0d5 100644 (file)
--- a/normalizesharedcommand.h
+++ b/normalizesharedcommand.h
@@ -24,6 +24,7 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "normalize.shared";            }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Normalize.shared"; }
        string getDescription()         { return "normalize samples in a shared or relabund file"; }
@@ -44,8 +45,8 @@ private:
        int norm;
        vector<string> Groups, outputNames;
                
-       int normalize(vector<SharedRAbundVector*>&, ofstream&);
-       int normalize(vector<SharedRAbundFloatVector*>&, ofstream&);
+       int normalize(vector<SharedRAbundVector*>&);
+       int normalize(vector<SharedRAbundFloatVector*>&);
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
        int eliminateZeroOTUS(vector<SharedRAbundFloatVector*>&);