added forward and reverse barcodes to trim.seqs to process illumina seqs

[mothur.git] / nocommands.h

diff --git a/nocommands.h b/nocommands.h
index f11673f98ce4e7c5c01f8c2aa624e85911f01fc7..5ed7e127d09ce645aa11cd43dd2192a1155b42dc 100644 (file)
--- a/nocommands.h
+++ b/nocommands.h
@@ -19,17 +19,22 @@ class NoCommand : public Command {
 public:
        NoCommand(string);
        NoCommand() {}
-       ~NoCommand();
-       vector<string> getRequiredParameters();
-       vector<string> getValidParameters();
-       vector<string> getRequiredFiles();
-       map<string, vector<string> > getOutputFiles() { return outputTypes; }
-       int execute();
-       void help() {}
+       ~NoCommand(){}
+       
+       vector<string> setParameters()  { return outputNames;   } //dummy, doesn't really do anything   
+       string getCommandName()                 { return "NoCommand";   }
+       string getCommandCategory()             { return "Hidden";              }
+       string getHelpString() { return "No Command"; } 
+       string getCitation() { return "no citation"; }
+       string getDescription()         { return "no description"; }
+
+       
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
        
 private:
        vector<string> outputNames;
-       map<string, vector<string> > outputTypes;
                
 };