m->openInputFile(nameMapFile, fileHandle);
}
-
+//**********************************************************************************************************************
+NameAssignment::NameAssignment(){ m = MothurOut::getInstance(); }
//**********************************************************************************************************************
void NameAssignment::readMap(){
try{
string firstCol, secondCol, skip;
// int index = 0;
-
+
map<string, int>::iterator itData;
int rowIndex = 0;
while(fileHandle){
- fileHandle >> firstCol; //read from first column
+ fileHandle >> firstCol; m->gobble(fileHandle); //read from first column
fileHandle >> secondCol; //read from second column
itData = (*this).find(firstCol);