added forward and reverse barcodes to trim.seqs to process illumina seqs

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index db1a4f1ca4e6c4207a652d05ac20b24157dfa46d..cc8bfb6b101b13b0ebe45a2eb2f5472600d6e0fc 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -82,6 +82,7 @@ class MothurOut {
                int appendFiles(string, string);
                int renameFile(string, string); //oldname, newname
                string getFullPathName(string);
+        string findProgramPath(string programName);
                string hasPath(string);
                string getExtension(string);
                string getPathName(string);
@@ -130,6 +131,7 @@ class MothurOut {
                void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
                int removeConfidences(string&);
+        string makeList(vector<string>&);
                
                //math operation
                int factorial(int num);