working of get.mimarkspackage and sra command

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 1747b1480c732ae42f361940ff57dcbe151bbc7b..a57fb136ba3d41b210e671e2fe85848a4d40f359 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -132,7 +132,7 @@ class MothurOut {
                //searchs and checks
                bool checkReleaseVersion(ifstream&, string);
                bool anyLabelsToProcess(string, set<string>&, string);
-               bool inUsersGroups(vector<string>, vector<string>);
+               bool inUsersGroups(vector<string>, vector<string>); //returns true if any of the strings in first vector are in second vector
         bool inUsersGroups(vector<int>, vector< vector<int> >);
                bool inUsersGroups(string, vector<string>);
         bool inUsersGroups(int, vector<int>);
@@ -146,6 +146,7 @@ class MothurOut {
         bool isLabelEquivalent(string, string);
         string getSimpleLabel(string);
         string findEdianness();
+        string mothurGetpid(int);
        
                
                //string manipulation
@@ -157,6 +158,7 @@ class MothurOut {
                void splitAtDash(string&, vector<string>&);
                void splitAtChar(string&, vector<string>&, char);
         void splitAtChar(string&, string&, char);
+        int removeBlanks(vector<string>&);
         vector<string> splitWhiteSpaceWithQuotes(string);
                int removeConfidences(string&);
         string removeQuotes(string);