pat's changes to seq.error command

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 2244eeef21b571ed94bcd8a12820e76416e5b7b8..a1d950661d8d0f3f8084859a85110db97846cd4d 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -12,6 +12,7 @@
 
 #include "mothur.h"
 
+
 /***********************************************/
 
 class MothurOut {
@@ -27,6 +28,8 @@ class MothurOut {
                void closeLog();
                string getDefaultPath() { return defaultPath; }
                void setDefaultPath(string);
+               string getOutputDir() { return outputDir; }
+               void setOutputDir(string);
                
                string getReleaseDate() { return releaseDate; }
                void setReleaseDate(string r) { releaseDate = r; }
@@ -82,11 +85,11 @@ class MothurOut {
                vector<vector<double> > binomial(int);
                float ceilDist(float, int);
                float roundDist(float, int);
+               unsigned int fromBase36(string);
 
                int control_pressed;
                bool executing;
                
-
        private:
                static MothurOut* _uniqueInstance;
                MothurOut( const MothurOut& ); // Disable copy constructor
@@ -95,7 +98,7 @@ class MothurOut {
                ~MothurOut();
 
                string logFileName;
-               string defaultPath;
+               string defaultPath, outputDir;
                string releaseDate, version;
                
                ofstream out;