added namefile to align.check and added seqs from namefile to optimizing piece of...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index efe1294245d915a66dc76e0baea439b8cf9caa1a..750973fde12ecffe585f354fc413612fc50f21b6 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -59,6 +59,7 @@ class MothurOut {
                string getline(istringstream&);
                void gobble(istream&);
                void gobble(istringstream&);
+               map<string, int> readNames(string);
                
                //searchs and checks
                bool checkReleaseVersion(ifstream&, string);
@@ -85,6 +86,7 @@ class MothurOut {
                vector<vector<double> > binomial(int);
                float ceilDist(float, int);
                float roundDist(float, int);
+               unsigned int fromBase36(string);
 
                int control_pressed;
                bool executing;