changed rarefaction.single output

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 3019386a64d8947bccfcee23a9705e3b7e5d3898..5ba3d083677a35f4ef0004506bf63f25facb481f 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -81,8 +81,10 @@ class MothurOut {
                void gobble(istringstream&);
                map<string, int> readNames(string);
                int readNames(string, map<string, string>&);
+               int readNames(string, map<string, vector<string> >&);
                int readNames(string, vector<seqPriorityNode>&, map<string, string>&);
-               void mothurRemove(string);
+               int mothurRemove(string);
+       
                
                //searchs and checks
                bool checkReleaseVersion(ifstream&, string);
@@ -92,6 +94,7 @@ class MothurOut {
                void getNumSeqs(ifstream&, int&);
                int getNumSeqs(ifstream&);
                int getNumNames(string);
+               int getNumChar(string, char);
                bool isTrue(string);
                bool isContainingOnlyDigits(string);
        
@@ -104,6 +107,7 @@ class MothurOut {
                void splitAtDash(string&, set<string>&);
                void splitAtDash(string&, vector<string>&);
                void splitAtChar(string&, vector<string>&, char);
+               int removeConfidences(string&);
                
                //math operation
                int factorial(int num);