fixed sub.sample groups bug

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 6654455063c37b56030a89c09c8d6ee71dcdf4be..57d3f7647dabf43dd30f2caeefa9ae2bd09a0d30 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -75,6 +75,7 @@ class MothurOut {
                int getNumSeqs(ifstream&);
                int getNumNames(string);
                bool isTrue(string);
+               bool isContainingOnlyDigits(string);
        
                
                //string manipulation
@@ -94,7 +95,7 @@ class MothurOut {
                unsigned int fromBase36(string);
 
                int control_pressed;
-               bool executing, runParse, jumble;
+               bool executing, runParse, jumble, gui;
                
                //current files - if you add a new type you must edit optionParser->getParameters, get.current command and mothurOut->printCurrentFiles/clearCurrentFiles.
                string getPhylipFile()          { return phylipfile;            }
@@ -168,6 +169,7 @@ class MothurOut {
                        accnosfile = "";
                        taxonomyfile = "";
                        processors = "1";
+                       gui = false;
                };
                ~MothurOut();