#include "mothur.h"
-
/***********************************************/
class MothurOut {
vector<string> Treenames;
map<string, string> names;
vector<string> namesOfGroups;
+ vector<string> binLabelsInFile;
+ vector<string> currentBinLabels;
string saveNextLabel, argv, sharedHeaderMode;
bool printedHeaders;
map<string, int> readNames(string);
int readNames(string, map<string, string>&);
int readNames(string, vector<seqPriorityNode>&, map<string, string>&);
+ void mothurRemove(string);
//searchs and checks
bool checkReleaseVersion(ifstream&, string);
float ceilDist(float, int);
float roundDist(float, int);
unsigned int fromBase36(string);
+ int getRandomIndex(int); //highest
int control_pressed;
bool executing, runParse, jumble, gui;
gui = false;
printedHeaders = false;
sharedHeaderMode = "";
- };
+ }
~MothurOut();
string logFileName;