void splitAtChar(string&, vector<string>&, char);
void splitAtChar(string&, string&, char);
int removeConfidences(string&);
+ string makeList(vector<string>&);
//math operation
int factorial(int num);
int getRandomIndex(int); //highest
int control_pressed;
- bool executing, runParse, jumble, gui, mothurCalling;
+ bool executing, runParse, jumble, gui, mothurCalling, debug;
//current files - if you add a new type you must edit optionParser->getParameters, get.current command and mothurOut->printCurrentFiles/clearCurrentFiles.
string getPhylipFile() { return phylipfile; }
printedHeaders = false;
commandInputsConvertError = false;
mothurCalling = false;
+ debug = false;
sharedHeaderMode = "";
}
~MothurOut();