bool checkReleaseVersion(ifstream&, string);
bool anyLabelsToProcess(string, set<string>&, string);
bool inUsersGroups(vector<string>, vector<string>);
+ bool inUsersGroups(vector<int>, vector< vector<int> >);
bool inUsersGroups(string, vector<string>);
+ bool inUsersGroups(int, vector<int>);
void getNumSeqs(ifstream&, int&);
int getNumSeqs(ifstream&);
int getNumNames(string);
void splitAtDash(string&, vector<string>&);
void splitAtChar(string&, vector<string>&, char);
void splitAtChar(string&, string&, char);
+ vector<string> splitWhiteSpaceWithQuotes(string);
int removeConfidences(string&);
string removeQuotes(string);
string makeList(vector<string>&);
float roundDist(float, int);
unsigned int fromBase36(string);
int getRandomIndex(int); //highest
+ double getStandardDeviation(vector<int>&);
int control_pressed;
bool executing, runParse, jumble, gui, mothurCalling, debug;