minor mods to seq.error

[mothur.git] / mothurout.cpp

diff --git a/mothurout.cpp b/mothurout.cpp
index 5a0ea1281b3644e1c0b42035054f9f7f2e0cf0f6..9896157d0fa8a968446e4e5f345398b59c6ef711 100644 (file)
--- a/mothurout.cpp
+++ b/mothurout.cpp
@@ -247,6 +247,53 @@ void MothurOut::mothurOutEndLine() {
        }
 }
 /*********************************************************************************************/
+void MothurOut::mothurOut(string output, ofstream& outputFile) {
+       try {
+               
+#ifdef USE_MPI
+               int pid;
+               MPI_Comm_rank(MPI_COMM_WORLD, &pid); 
+               
+               if (pid == 0) { //only one process should output to screen
+#endif
+                       
+                       cout << output;
+                       out << output;
+                       outputFile << output;
+                       
+#ifdef USE_MPI
+               }
+#endif
+       }
+       catch(exception& e) {
+               errorOut(e, "MothurOut", "MothurOut");
+               exit(1);
+       }
+}
+/*********************************************************************************************/
+void MothurOut::mothurOutEndLine(ofstream& outputFile) {
+       try {
+#ifdef USE_MPI
+               int pid;
+               MPI_Comm_rank(MPI_COMM_WORLD, &pid); 
+               
+               if (pid == 0) { //only one process should output to screen
+#endif
+                       
+                       cout << endl;
+                       out << endl;
+                       outputFile << endl;
+                       
+#ifdef USE_MPI
+               }
+#endif
+       }
+       catch(exception& e) {
+               errorOut(e, "MothurOut", "MothurOutEndLine");
+               exit(1);
+       }
+}
+/*********************************************************************************************/
 void MothurOut::mothurOutJustToLog(string output) {
        try {
                #ifdef USE_MPI
@@ -515,6 +562,21 @@ string MothurOut::getSimpleName(string longName){
 
 /***********************************************************************/
 
+int MothurOut::getRandomIndex(int highest){
+       try {
+               
+               int random = (int) ((float)(highest+1) * (float)(rand()) / ((float)RAND_MAX+1.0));
+               
+               return random;
+       }
+       catch(exception& e) {
+               errorOut(e, "MothurOut", "getRandomIndex");
+               exit(1);
+       }       
+       
+}
+/**********************************************************************/
+
 string MothurOut::getPathName(string longName){
        try {
                string rootPathName = longName;