exit(1);
}
}
+/***********************************************************************/
+vector<string> MothurOut::splitWhiteSpaceWithQuotes(string input){
+ try {
+ vector<string> pieces;
+ string rest = "";
+
+ int pos = input.find('\'');
+ int pos2 = input.find('\"');
+
+ if ((pos == string::npos) && (pos2 == string::npos)) { return splitWhiteSpace(input); } //no quotes to worry about
+ else {
+ for (int i = 0; i < input.length(); i++) {
+ if ((input[i] == '\'') || (input[i] == '\"') || (rest == "\'") || (rest == "\"")) { //grab everything til end or next ' or "
+ rest += input[i];
+ for (int j = i+1; j < input.length(); j++) {
+ if ((input[j] == '\'') || (input[j] == '\"')) { //then quit
+ rest += input[j];
+ i = j+1;
+ j+=input.length();
+ }else { rest += input[j]; }
+ }
+ }else if (!isspace(input[i])) { rest += input[i]; }
+ else {
+ if (rest != "") { pieces.push_back(rest); rest = ""; }
+ while (i < input.length()) { //gobble white space
+ if (isspace(input[i])) { i++; }
+ else { rest = input[i]; break; } //cout << "next piece buffer = " << nextPiece << endl;
+ }
+ }
+ }
+
+ if (rest != "") { pieces.push_back(rest); }
+ }
+ return pieces;
+ }
+ catch(exception& e) {
+ errorOut(e, "MothurOut", "splitWhiteSpace");
+ exit(1);
+ }
+}
//**********************************************************************************************************************
int MothurOut::readTax(string namefile, map<string, string>& taxMap) {
try {
exit(1);
}
}
+/**************************************************************************************************/
+
+bool MothurOut::inUsersGroups(vector<int> set, vector< vector<int> > sets) {
+ try {
+ for (int i = 0; i < sets.size(); i++) {
+ if (set == sets[i]) { return true; }
+ }
+ return false;
+ }
+ catch(exception& e) {
+ errorOut(e, "MothurOut", "inUsersGroups");
+ exit(1);
+ }
+}
+/**************************************************************************************************/
+
+bool MothurOut::inUsersGroups(int groupname, vector<int> Groups) {
+ try {
+ for (int i = 0; i < Groups.size(); i++) {
+ if (groupname == Groups[i]) { return true; }
+ }
+ return false;
+ }
+ catch(exception& e) {
+ errorOut(e, "MothurOut", "inUsersGroups");
+ exit(1);
+ }
+}
+
/**************************************************************************************************/
//returns true if any of the strings in first vector are in second vector
bool MothurOut::inUsersGroups(vector<string> groupnames, vector<string> Groups) {