mods in testing 1.16.0

[mothur.git] / mothur.h

diff --git a/mothur.h b/mothur.h
index bfe0692cf035a8c96a933da2ce70ced46ca98429..b0ad51e6736159e738d83d08a418f6cdecaac767 100644 (file)
--- a/mothur.h
+++ b/mothur.h
@@ -36,6 +36,7 @@
 #include <map>
 #include <string>
 #include <list>
+#include <string.h>
 
 //math
 #include <cmath>
@@ -56,6 +57,7 @@
        #include <sys/wait.h>
        #include <sys/time.h>
        #include <sys/resource.h>
+       #include <sys/stat.h>
        #include <unistd.h>
        
        #ifdef USE_READLINE
@@ -116,6 +118,17 @@ struct seqDist {
        seqDist(int s1, int s2, float d) : seq1(s1), seq2(s2), dist(d) {}
        ~seqDist() {}
 };
+/************************************************************/
+struct distlinePair {
+       int start;
+       int end;
+       
+};
+/************************************************************/
+//sorts lowest to highest
+inline bool compareDistLinePairs(distlinePair left, distlinePair right){
+       return (left.end < right.end);  
+} 
 //********************************************************************************************************************
 //sorts lowest to highest
 inline bool compareSequenceDistance(seqDist left, seqDist right){