#include "mothur.h"
#include "engine.hpp"
#include "mothurout.h"
+#include "referencedb.h"
/**************************************************************************************************/
CommandFactory* CommandFactory::_uniqueInstance = 0;
MothurOut* MothurOut::_uniqueInstance = 0;
-
+ReferenceDB* ReferenceDB::myInstance = 0;
/***********************************************************************/
volatile int ctrlc_pressed = 0;
void ctrlc_handler ( int sig ) {
outNewLog.close();
m->appendFiles(logFileName, newlogFileName);
- remove(logFileName.c_str());
+ m->mothurRemove(logFileName);
}
}else{
newlogFileName = outputDir + logFileName;