fixed blast code path problem

[mothur.git] / mothur.cpp

diff --git a/mothur.cpp b/mothur.cpp
index 3a91aa6e595393111416cf04b367af0a8ca38e6f..add60fa22f5c9a95137b651cf694dd6f27132ad7 100644 (file)
--- a/mothur.cpp
+++ b/mothur.cpp
@@ -13,26 +13,28 @@
 
 using namespace std;
 
+/**************************************************************************************************/
+
 GlobalData* GlobalData::_uniqueInstance = 0;
 
 int main(int argc, char *argv[]){
        try {
-       //      srand(54321);
+               //srand(54321);
                srand( (unsigned)time( NULL ) );
 
-               Engine* dotur;
+               Engine* mothur;
                bool bail = 0;
 
                if(argc>1){
-                       dotur = new BatchEngine(argv[1]);
+                       mothur = new BatchEngine(argv[0], argv[1]);
                }
                else{
-                       dotur = new InteractEngine();           
+                       mothur = new InteractEngine(argv[0]);           
                }
 
-               while(bail == 0)                {       bail = dotur->getInput();                       }
+               while(bail == 0)                {       bail = mothur->getInput();                      }
        
-               delete dotur;
+               delete mothur;
        
                return 0;
        }
@@ -46,3 +48,5 @@ int main(int argc, char *argv[]){
        }
 }
 
+/**************************************************************************************************/
+