made make.table alias to count.seqs command. added large parameter to count.seqs...

[mothur.git] / mgclustercommand.h

diff --git a/mgclustercommand.h b/mgclustercommand.h
index a51fec5b298991b976095c52b7944c2fbab84cb8..ea2c1de8603d746277017d8b557fcc5171c9af39 100644 (file)
--- a/mgclustercommand.h
+++ b/mgclustercommand.h
@@ -29,10 +29,13 @@ public:
        ~MGClusterCommand(){}
        
        vector<string> setParameters();
-       string getCommandName()                 { return "mgcluster";                           }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
+       string getCommandName()                 { return "mgcluster";   }
+       string getCommandCategory()             { return "Clustering";  }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
-       
+       string getCitation() { return "Schloss PD, Handelsman J (2008). A statistical toolbox for metagenomics. BMC Bioinformatics 9: 34. \nhttp://www.mothur.org/wiki/Mgcluster"; }
+       string getDescription()         { return "cluster your sequences into OTUs using a blast file"; }
+
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }