#include "command.hpp"
#include "readblast.h"
-#include "sparsematrix.hpp"
#include "nameassignment.hpp"
#include "cluster.hpp"
#include "hcluster.h"
double cutoff;
float penalty;
int precision, length, precisionLength;
- bool abort, minWanted, hclusterWanted, merge, hard, large;
+ bool abort, minWanted, hclusterWanted, merge, hard;
void printData(ListVector*);
ListVector* mergeOPFs(map<string, int>, float);