added debug statements to trim.seqs

[mothur.git] / mgclustercommand.cpp

diff --git a/mgclustercommand.cpp b/mgclustercommand.cpp
index 508b05f01d432a83d387b9b5b072d59a4b0fdcd5..2143495ce0cae46cd52a145ec19abccf9d654ac8 100644 (file)
--- a/mgclustercommand.cpp
+++ b/mgclustercommand.cpp
@@ -215,7 +215,6 @@ MGClusterCommand::MGClusterCommand(string option) {
 //**********************************************************************************************************************
 int MGClusterCommand::execute(){
        try {
-               cout << "1" << endl;
                if (abort == true) { if (calledHelp) { return 0; }  return 2;   }
                
                //read names file
@@ -717,12 +716,6 @@ void MGClusterCommand::sortHclusterFiles(string unsortedDist, string unsortedOve
 
 void MGClusterCommand::createRabund(map<string, int> nameMapCounts){
     try {
-        //RAbundVector rav;
-        map<string,int>::iterator it;
-        //it = nameMapCounts.begin();
-        //for(int i = 0; i < list->getNumBins(); i++) {   rav.push_back((*it).second); it++;    }
-        for ( it=nameMapCounts.begin(); it!=nameMapCounts.end(); it++ ) {    rav.push_back( it->second );    }
-        //return rav;
     }
     catch(exception& e) {
                m->errorOut(e, "MGClusterCommand", "createRabund");