fixed bug with normalize.shared, printed out numbins twice. fixed bug with summary...

[mothur.git] / metastatscommand.cpp

diff --git a/metastatscommand.cpp b/metastatscommand.cpp
index 08c94ba3261c47c33d13368d9fbd84718cb5f3a2..2078584426ffecc4a445a7486825af7fc7bb0077 100644 (file)
--- a/metastatscommand.cpp
+++ b/metastatscommand.cpp
@@ -26,6 +26,7 @@ vector<string> MetaStatsCommand::getValidParameters(){
 //**********************************************************************************************************************
 MetaStatsCommand::MetaStatsCommand(){  
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["metastats"] = tempOutNames;
@@ -118,7 +119,7 @@ MetaStatsCommand::MetaStatsCommand(string option) {
                        
                        //make sure the user has already run the read.otu command
                        if ((globaldata->getSharedFile() == "")) {
-                                m->mothurOut("You must read a list and a group, or a shared file before you can use the normalize.shared command."); m->mothurOutEndLine(); abort = true; 
+                                m->mothurOut("You must read a list and a group, or a shared file before you can use the metastats command."); m->mothurOutEndLine(); abort = true; 
                        }
 
                        //check for optional parameter and set defaults
@@ -441,7 +442,6 @@ int MetaStatsCommand::driver(int start, int num, vector<SharedRAbundVector*>& th
                                }
                                
                                m->mothurOut("Comparing " + setA + " and " + setB + "..."); m->mothurOutEndLine(); 
-                               
                                metastat_main(output, thisLookUp[0]->getNumBins(), subset.size(), threshold, iters, data, setACount);
                                
                                m->mothurOutEndLine();