bool abort, allLines, pickedGroups;
set<string> labels; //holds labels to be used
- string groups, label, outputDir, inputDir, designfile, sharedfile;
+ string groups, label, outputDir, inputDir, designfile, sharedfile, groupfile;
vector<string> Groups, outputNames;
int process(vector<SharedRAbundVector*>&, ofstream&);
+ int processSharedFile(GroupMap*&);
+ int processGroupFile(GroupMap*&);
};
#endif