fixed bug with trim.seqs allfiles=t

[mothur.git] / mergegroupscommand.cpp

diff --git a/mergegroupscommand.cpp b/mergegroupscommand.cpp
index 74bf0dea86c84c093d7d84b9c807b92be74892c6..df74ade901634cc2cbfaa5a06877354a819e2ee2 100644 (file)
--- a/mergegroupscommand.cpp
+++ b/mergegroupscommand.cpp
@@ -43,7 +43,7 @@ string MergeGroupsCommand::getHelpString(){
                helpString += "The merge.groups command should be in the following format: merge.groups(design=yourDesignFile, shared=yourSharedFile).\n";
                helpString += "Example merge.groups(design=temp.design, groups=A-B-C, shared=temp.shared).\n";
                helpString += "The default value for groups is all the groups in your sharedfile, and all labels in your inputfile will be used.\n";
-               helpString += "Note: No spaces between parameter labels (i.e. groups), '=' and parameters (i.e.yourGroups).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. groups), '=' and parameters (i.e.yourGroups).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -73,6 +73,7 @@ MergeGroupsCommand::MergeGroupsCommand(string option) {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();