indicator command

[mothur.git] / mergefilecommand.cpp

diff --git a/mergefilecommand.cpp b/mergefilecommand.cpp
index cb241c6b301396e7c7d0482d98be861a926b8a64..c944e3bc8774aaa9ccffb712cdda823741c7d2e3 100644 (file)
--- a/mergefilecommand.cpp
+++ b/mergefilecommand.cpp
@@ -33,7 +33,7 @@ string MergeFileCommand::getHelpString(){
                helpString += "The merge.file command takes a list of files separated by dashes and merges them into one file."; 
                helpString += "The merge.file command parameters are input and output."; 
                helpString += "Example merge.file(input=small.fasta-large.fasta, output=all.fasta).";
-               helpString += "Note: No spaces between parameter labels (i.e. output), '=' and parameters (i.e.yourOutputFileName).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. output), '=' and parameters (i.e.yourOutputFileName).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -64,7 +64,7 @@ MergeFileCommand::MergeFileCommand(string option)  {
                if(option == "help") {
                        help();
                        abort = true; calledHelp = true;
-               }
+               }else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                else {
                        vector<string> myArray = setParameters();