added warning about merging with something above cutoff to cluster. working on chimeras

[mothur.git] / matrixoutputcommand.h

diff --git a/matrixoutputcommand.h b/matrixoutputcommand.h
index 02e8fe6b4cb75351fadfc5a503b78ed6bd589a7d..ff7519ee00751dcad80ebdb9bc04e384f54cd45b 100644 (file)
--- a/matrixoutputcommand.h
+++ b/matrixoutputcommand.h
@@ -42,13 +42,13 @@ private:
        InputData* input;
        ValidCalculators* validCalculator;
        vector<SharedRAbundVector*> lookup;
-       string exportFileName;
+       string exportFileName, output;
        int numGroups;
        ofstream out;
 
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string outputFile, calc, groups, label;
+       string outputFile, calc, groups, label, outputDir;
        vector<string>  Estimators, Groups; //holds estimators to be used