private:
void printSims(ostream&);
- void process(vector<SharedRAbundVector*>);
+ int process(vector<SharedRAbundVector*>);
GlobalData* globaldata;
ReadOTUFile* read;
InputData* input;
ValidCalculators* validCalculator;
vector<SharedRAbundVector*> lookup;
- string exportFileName;
+ string exportFileName, output;
int numGroups;
ofstream out;
bool abort, allLines;
set<string> labels; //holds labels to be used
- string outputFile, calc, groups, label;
- vector<string> Estimators, Groups; //holds estimators to be used
+ string outputFile, calc, groups, label, outputDir;
+ vector<string> Estimators, Groups, outputNames; //holds estimators to be used
};