a few modifications for 1.9

[mothur.git] / matrixoutputcommand.h

diff --git a/matrixoutputcommand.h b/matrixoutputcommand.h
index ff7519ee00751dcad80ebdb9bc04e384f54cd45b..537f7916299d36c7f628a9e7e6974821746f3b12 100644 (file)
--- a/matrixoutputcommand.h
+++ b/matrixoutputcommand.h
@@ -33,7 +33,7 @@ public:
        
 private:
        void printSims(ostream&);
-       void process(vector<SharedRAbundVector*>);
+       int process(vector<SharedRAbundVector*>);
        
        GlobalData* globaldata;
        ReadOTUFile* read;
@@ -49,7 +49,7 @@ private:
        bool abort, allLines;
        set<string> labels; //holds labels to be used
        string outputFile, calc, groups, label, outputDir;
-       vector<string>  Estimators, Groups; //holds estimators to be used
+       vector<string>  Estimators, Groups, outputNames; //holds estimators to be used
        
 
 };