modified reportfile class

[mothur.git] / makegroupcommand.h

diff --git a/makegroupcommand.h b/makegroupcommand.h
index 76435bf2ac7820caa0000098b50fa80a17c6c86e..e836d20f50b7b04e6cedefbb4f01616f6380b538 100644 (file)
--- a/makegroupcommand.h
+++ b/makegroupcommand.h
@@ -15,16 +15,22 @@
 class MakeGroupCommand : public Command {
        
 public:
-       MakeGroupCommand(string);       
+       MakeGroupCommand(string);
+       MakeGroupCommand();     
        ~MakeGroupCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute(); 
        void help();    
        
 private:
                
-       string fastaFileName, groups, outputDir;
+       string fastaFileName, groups, outputDir, filename, output;
        vector<string> fastaFileNames;
-       vector<string> groupsNames;
+       vector<string> groupsNames, outputNames;
+       map<string, vector<string> > outputTypes;
        
        bool abort;
 };