made get.oturep more memory efficient by breaking the work into 2 pieces.

[mothur.git] / makefile

diff --git a/makefile b/makefile
index 5812d4551f9c6cc635f8ed4ee5bde2505a4b18df..b7bb8d04798f870be5f84d925323b9a79be08ca4 100644 (file)
--- a/makefile
+++ b/makefile
@@ -26,7 +26,8 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0\r
 endif\r
 \r
-USEMPI ?= no\r
+USEMPI ?= no
+\r
 \r
 ifeq  ($(strip $(USEMPI)),yes)\r
     CC_OPTIONS += -DUSE_MPI\r
@@ -220,7 +221,7 @@ mothur : \
                ./classify.o\\r
                ./phylotree.o\\r
                ./bayesian.o\
-               ./rawtrainingdatamaker.o\\r
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -239,7 +240,8 @@ mothur : \
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\r
+               ./geom.o\
+               ./setlogfilecommand.o\r
        $(CC) $(LNK_OPTIONS) \\r
                ./sharedutilities.o\\r
                ./treegroupscommand.o\\r
@@ -418,7 +420,7 @@ mothur : \
                ./classify.o\\r
                ./phylotree.o\\r
                ./bayesian.o\
-               ./rawtrainingdatamaker.o\\r
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -437,7 +439,8 @@ mothur : \
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\\r
+               ./geom.o\
+               ./setlogfilecommand.o\\r
                -o ../Release/mothur\r
 \r
 clean : \r
@@ -619,7 +622,7 @@ clean :
                ./classify.o\\r
                ./phylotree.o\\r
                ./bayesian.o\
-               ./rawtrainingdatamaker.o\\r
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -638,7 +641,8 @@ clean :
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\\r
+               ./geom.o\
+               ./setlogfilecommand.o\\r
                mothur\r
 \r
 install : mothur\r
@@ -1623,9 +1627,13 @@ install : mothur
 ./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp\r
        $(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o\r
 
-# Item # 171 -- rawtrainingdatamaker --\r
-./rawtrainingdatamaker.o : rawtrainingdatamaker.cpp\r
-       $(CC) $(CC_OPTIONS) rawtrainingdatamaker.cpp -c $(INCLUDE) -o ./rawtrainingdatamaker.o\r
+# Item # 197 -- phylosummary --\r
+./phylosummary.o : phylosummary.cpp\r
+       $(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o\r
+
+# Item # 198 -- setlogfilecommand --\r
+./setlogfilecommand.o : setlogfilecommand.cpp\r
+       $(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o\r
 \r
 \r
 \r