sped up splitting of distance file by 2.5 times by buffering the read and writes.

[mothur.git] / makefile

diff --git a/makefile b/makefile
index fdcef2794c06cb81c399376aaf79518246c23aca..a9732412c6168e2c5c9e2a8f0dabdd1a1fdcdbc9 100644 (file)
--- a/makefile
+++ b/makefile
@@ -224,6 +224,7 @@ mothur : \
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -432,6 +433,7 @@ mothur : \
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -643,6 +645,7 @@ clean :
                ./taxonomyequalizer.o\\r
                ./phylotypecommand.o\\r
                ./classifyseqscommand.o\\r
+               ./classifyotucommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
@@ -1691,11 +1694,16 @@ install : mothur
        $(CC) $(CC_OPTIONS) splitabundcommand.cpp -c $(INCLUDE) -o ./splitabundcommand.o\r
        \r
 # Item # 206 -- splitmatrix --\r
-./splitmatrix.o : splitmatrix.o\r
+./splitmatrix.o : splitmatrix.cpp\r
        $(CC) $(CC_OPTIONS) splitmatrix.cpp -c $(INCLUDE) -o ./splitmatrix.o\r
        \r
 # Item # 207 -- splitmatrix --\r
 ./clustersplitcommand.o : clustersplitcommand.cpp\r
        $(CC) $(CC_OPTIONS) clustersplitcommand.cpp -c $(INCLUDE) -o ./clustersplitcommand.o\r
+       \r
+# Item # 207 -- splitmatrix --\r
+./classifyotucommand.o : classifyotucommand.cpp\r
+       $(CC) $(CC_OPTIONS) classifyotucommand.cpp -c $(INCLUDE) -o ./classifyotucommand.o\r
+\r
 \r
 ##### END RUN ####\r