# Macros\r
#\r
\r
-CC = g++\r
+CC = mpic++\r
CC_OPTIONS = -O3\r
\r
# if you do not want to use the readline library set to no, default yes.\r
-L../readline-6.0\r
endif\r
\r
-USEMPI ?= no\r
+USEMPI ?= no
+\r
\r
ifeq ($(strip $(USEMPI)),yes)\r
CC_OPTIONS += -DUSE_MPI\r
./classifyseqscommand.o\\r
./parsesffcommand.o\\r
./classify.o\\r
- ./phylotree.o\\r
- ./bayesian.o\\r
+ ./phylotree.o\
+ ./phylodiversity.o\
+ ./phylodiversitycommand.o\\r
+ ./bayesian.o\
+ ./phylosummary.o\\r
./alignmentdb.o\\r
./knn.o\\r
./distancedb.o\\r
./qstat.o\\r
./shen.o\\r
./logsd.o\\r
- ./geom.o\r
+ ./geom.o\
+ ./setlogfilecommand.o\r
$(CC) $(LNK_OPTIONS) \\r
./sharedutilities.o\\r
./treegroupscommand.o\\r
./classifyseqscommand.o\\r
./parsesffcommand.o\\r
./classify.o\\r
- ./phylotree.o\\r
- ./bayesian.o\\r
+ ./phylotree.o\
+ ./phylodiversity.o\
+ ./phylodiversitycommand.o\\r
+ ./bayesian.o\
+ ./phylosummary.o\\r
./alignmentdb.o\\r
./knn.o\\r
./distancedb.o\\r
./qstat.o\\r
./shen.o\\r
./logsd.o\\r
- ./geom.o\\r
+ ./geom.o\
+ ./setlogfilecommand.o\\r
-o ../Release/mothur\r
\r
clean : \r
./classifyseqscommand.o\\r
./parsesffcommand.o\\r
./classify.o\\r
- ./phylotree.o\\r
- ./bayesian.o\\r
+ ./phylotree.o\
+ ./phylodiversity.o\
+ ./phylodiversitycommand.o\\r
+ ./bayesian.o\
+ ./phylosummary.o\\r
./alignmentdb.o\\r
./knn.o\\r
./distancedb.o\\r
./qstat.o\\r
./shen.o\\r
./logsd.o\\r
- ./geom.o\\r
+ ./geom.o\
+ ./setlogfilecommand.o\\r
mothur\r
\r
install : mothur\r
# Item # 196 -- chimerabellerophoncommand --\r
./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp\r
$(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o\r
+
+# Item # 197 -- phylosummary --\r
+./phylosummary.o : phylosummary.cpp\r
+ $(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o\r
+
+# Item # 198 -- setlogfilecommand --\r
+./setlogfilecommand.o : setlogfilecommand.cpp\r
+ $(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o\r
+\r
+# Item # 199 -- phylodiversity --\r
+./phylodiversity.o : phylodiversity.cpp\r
+ $(CC) $(CC_OPTIONS) phylodiversity.cpp -c $(INCLUDE) -o ./phylodiversity.o\r
+\r
+# Item # 200 -- phylodiversitycommand --\r
+./phylodiversitycommand.o : phylodiversitycommand.cpp\r
+ $(CC) $(CC_OPTIONS) phylodiversitycommand.cpp -c $(INCLUDE) -o ./phylodiversitycommand.o\r
+\r
\r
\r
##### END RUN ####\r