changed confidence scores calculation in bayesian

[mothur.git] / makefile

diff --git a/makefile b/makefile
index 181b897a16f87b1f5e1cd2689d4c1621dbeac3c1..a868ec524c0366e2e942c4a57379b4248a619569 100644 (file)
--- a/makefile
+++ b/makefile
@@ -26,7 +26,8 @@ ifeq  ($(strip $(USEREADLINE)),yes)
       -L../readline-6.0\r
 endif\r
 \r
-USEMPI ?= no\r
+USEMPI ?= no
+\r
 \r
 ifeq  ($(strip $(USEMPI)),yes)\r
     CC_OPTIONS += -DUSE_MPI\r
@@ -218,7 +219,9 @@ mothur : \
                ./classifyseqscommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
-               ./phylotree.o\\r
+               ./phylotree.o\
+               ./phylodiversity.o\
+               ./phylodiversitycommand.o\\r
                ./bayesian.o\
                ./phylosummary.o\\r
                ./alignmentdb.o\\r
@@ -417,7 +420,9 @@ mothur : \
                ./classifyseqscommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
-               ./phylotree.o\\r
+               ./phylotree.o\
+               ./phylodiversity.o\
+               ./phylodiversitycommand.o\\r
                ./bayesian.o\
                ./phylosummary.o\\r
                ./alignmentdb.o\\r
@@ -619,7 +624,9 @@ clean :
                ./classifyseqscommand.o\\r
                ./parsesffcommand.o\\r
                ./classify.o\\r
-               ./phylotree.o\\r
+               ./phylotree.o\
+               ./phylodiversity.o\
+               ./phylodiversitycommand.o\\r
                ./bayesian.o\
                ./phylosummary.o\\r
                ./alignmentdb.o\\r
@@ -1634,6 +1641,14 @@ install : mothur
 ./setlogfilecommand.o : setlogfilecommand.cpp\r
        $(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o\r
 \r
+# Item # 199 -- phylodiversity --\r
+./phylodiversity.o : phylodiversity.cpp\r
+       $(CC) $(CC_OPTIONS) phylodiversity.cpp -c $(INCLUDE) -o ./phylodiversity.o\r
+\r
+# Item # 200 -- phylodiversitycommand --\r
+./phylodiversitycommand.o : phylodiversitycommand.cpp\r
+       $(CC) $(CC_OPTIONS) phylodiversitycommand.cpp -c $(INCLUDE) -o ./phylodiversitycommand.o\r
+\r
 \r
 \r
 ##### END RUN ####\r