rsem v1.1.11, allow spaces appear in field seqname and attributes gene_id, transcript...

[rsem.git] / makefile

diff --git a/makefile b/makefile
index 12fc9d61a605ffa5ea7bf76d123388f246141afc..97cba95d1e8aad570e1f40d871f2c80b8a054768 100644 (file)
--- a/makefile
+++ b/makefile
@@ -92,7 +92,7 @@ simulation.o : utils.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedE
        $(CC) $(COFLAGS) simulation.cpp
 
 rsem-run-gibbs : Gibbs.o
-       $(CC) -o rsem-run-gibbs Gibbs.o 
+       $(CC) -o rsem-run-gibbs Gibbs.o -lpthread
 
 #some header files are omitted
 Gibbs.o : utils.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h boost/random.hpp Gibbs.cpp 
@@ -102,7 +102,7 @@ rsem-calculate-credibility-intervals : calcCI.o
        $(CC) -o rsem-calculate-credibility-intervals calcCI.o
 
 #some header files are omitted
-calcCI.o : utils.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h calcCI.cpp
+calcCI.o : utils.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h calcCI.cpp boost/random.hpp
        $(CC) $(COFLAGS) calcCI.cpp
 
 clean: