MOTHUR_FILES = "\"../Release\""
-RELEASE_DATE = "\"9/9/2010\""
+RELEASE_DATE = "\"9/17/2010\""
VERSION = "\"1.13.0\""
CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION}
CXXFLAGS += -DUSE_MPI
endif
+# if you want to enable reading and writing of compressed files, set to yes.
+# The default is no. this may only work on unix-like systems.
+
+USECOMPRESSION ?= no
+
+ifeq ($(strip $(USECOMPRESSION)),yes)
+ CXXFLAGS += -DUSE_COMPRESSION
+endif
+
#
# INCLUDE directories for mothur
#
#
OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
+OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
mothur : $(OBJECTS)
$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS)
install : mothur
cp mothur ../Release/mothur
-
+
+%.o : %.c %.h
+ $(COMPILE.c) $(OUTPUT_OPTION) $<
%.o : %.cpp %.h
$(COMPILE.cpp) $(OUTPUT_OPTION) $<
%.o : %.cpp %.hpp