CXXFLAGS += -O3
MOTHUR_FILES = "\"../Release\""
+
+RELEASE_DATE = "\"9/17/2010\""
+VERSION = "\"1.13.0\""
+
+CXXFLAGS += -DRELEASE_DATE=${RELEASE_DATE} -DVERSION=${VERSION}
+
ifeq ($(strip $(MOTHUR_FILES)),"\"Enter_your_default_path_here\"")
else
CXXFLAGS += -DMOTHUR_FILES=${MOTHUR_FILES}
CXXFLAGS += -DBIT_VERSION
#if you are using centos uncomment the following lines
- #CC = g++44
+ #CXX = g++44
#CXXFLAGS += -mtune=native -march=native -m64
endif
# if you do not want to use the readline library, set this to no.
# make sure you have the library installed
-USEREADLINE ?= no
+USEREADLINE ?= yes
ifeq ($(strip $(USEREADLINE)),yes)
CXXFLAGS += -DUSE_READLINE
CXXFLAGS += -DUSE_MPI
endif
+# if you want to enable reading and writing of compressed files, set to yes.
+# The default is no. this may only work on unix-like systems.
+
+USECOMPRESSION ?= no
+
+ifeq ($(strip $(USECOMPRESSION)),yes)
+ CXXFLAGS += -DUSE_COMPRESSION
+endif
+
#
# INCLUDE directories for mothur
#
#
OBJECTS=$(patsubst %.cpp,%.o,$(wildcard *.cpp))
+OBJECTS+=$(patsubst %.c,%.o,$(wildcard *.c))
mothur : $(OBJECTS)
$(CXX) $(LDFLAGS) $(TARGET_ARCH) -o $@ $(OBJECTS)
install : mothur
cp mothur ../Release/mothur
-
+
+%.o : %.c %.h
+ $(COMPILE.c) $(OUTPUT_OPTION) $<
%.o : %.cpp %.h
$(COMPILE.cpp) $(OUTPUT_OPTION) $<
%.o : %.cpp %.hpp