added set.logfile command

[mothur.git] / makefile

diff --git a/makefile b/makefile
index d95b5ef31c04f2e119136d2cc0d146bb2343397b..181b897a16f87b1f5e1cd2689d4c1621dbeac3c1 100644 (file)
--- a/makefile
+++ b/makefile
@@ -10,7 +10,7 @@
 # Macros\r
 #\r
 \r
-CC = g++\r
+CC = mpic++\r
 CC_OPTIONS = -O3\r
 \r
 # if you do not want to use the readline library set to no, default yes.\r
@@ -219,7 +219,8 @@ mothur : \
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -238,7 +239,8 @@ mothur : \
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\r
+               ./geom.o\
+               ./setlogfilecommand.o\r
        $(CC) $(LNK_OPTIONS) \\r
                ./sharedutilities.o\\r
                ./treegroupscommand.o\\r
@@ -416,7 +418,8 @@ mothur : \
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -435,7 +438,8 @@ mothur : \
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\\r
+               ./geom.o\
+               ./setlogfilecommand.o\\r
                -o ../Release/mothur\r
 \r
 clean : \r
@@ -616,7 +620,8 @@ clean :
                ./parsesffcommand.o\\r
                ./classify.o\\r
                ./phylotree.o\\r
-               ./bayesian.o\\r
+               ./bayesian.o\
+               ./phylosummary.o\\r
                ./alignmentdb.o\\r
                ./knn.o\\r
                ./distancedb.o\\r
@@ -635,7 +640,8 @@ clean :
                ./qstat.o\\r
                ./shen.o\\r
                ./logsd.o\\r
-               ./geom.o\\r
+               ./geom.o\
+               ./setlogfilecommand.o\\r
                mothur\r
 \r
 install : mothur\r
@@ -1619,6 +1625,15 @@ install : mothur
 # Item # 196 -- chimerabellerophoncommand --\r
 ./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp\r
        $(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o\r
+
+# Item # 197 -- phylosummary --\r
+./phylosummary.o : phylosummary.cpp\r
+       $(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o\r
+
+# Item # 198 -- setlogfilecommand --\r
+./setlogfilecommand.o : setlogfilecommand.cpp\r
+       $(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o\r
+\r
 \r
 \r
 ##### END RUN ####\r