added phylip as output file type for commands that output distance matrices. added...

[mothur.git] / makefastqcommand.h

diff --git a/makefastqcommand.h b/makefastqcommand.h
index 946c990047fe8ad65f2fb332deb6e072534fc932..9119ebd50c4c9362e73a72902b888d4f1d06b887 100644 (file)
--- a/makefastqcommand.h
+++ b/makefastqcommand.h
@@ -24,7 +24,11 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "make.fastq";                          }
        string getCommandCategory()             { return "Sequence Processing";         }
+       string getOutputFileNameTag(string, string);
        string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Make.fastq"; }
+       string getDescription()         { return "creates a fastq file from a fasta and quality file"; }
+
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }