vector<string> setParameters();
string getCommandName() { return "make.biom"; }
string getCommandCategory() { return "General"; }
+ string getOutputFileNameTag(string, string);
string getHelpString();
string getCitation() { return "http://biom-format.org/documentation/biom_format.html, http://www.mothur.org/wiki/Make.biom"; }
string getDescription() { return "creates a biom file"; }
int getBiom(vector<SharedRAbundVector*>&);
vector<string> getMetaData(vector<SharedRAbundVector*>&);
+ vector<string> parseTax(string tax, vector<string>& scores);
};