try {
for(int i=0;i<data.size();i++){
if(data[i] != ""){
- int binSize = getNumNames(data[i]);
+ int binSize = m->getNumNames(data[i]);
numBins = i+1;
if(binSize > maxRank) { maxRank = binSize; }
numSeqs += binSize;
f >> inputData;
set(i, inputData);
}
-
- gobble(f);
+ m->gobble(f);
}
catch(exception& e) {
m->errorOut(e, "ListVector", "ListVector");
void ListVector::set(int binNumber, string seqNames){
try {
- int nNames_old = getNumNames(data[binNumber]);
+ int nNames_old = m->getNumNames(data[binNumber]);
data[binNumber] = seqNames;
- int nNames_new = getNumNames(seqNames);
+ int nNames_new = m->getNumNames(seqNames);
if(nNames_old == 0) { numBins++; }
if(nNames_new == 0) { numBins--; }
void ListVector::push_back(string seqNames){
try {
data.push_back(seqNames);
- int nNames = getNumNames(seqNames);
+ int nNames = m->getNumNames(seqNames);
numBins++;
RAbundVector rav;
for(int i=0;i<data.size();i++){
- int binSize = getNumNames(data[i]);
+ int binSize = m->getNumNames(data[i]);
rav.push_back(binSize);
}
SAbundVector sav(maxRank+1);
for(int i=0;i<data.size();i++){
- int binSize = getNumNames(data[i]);
+ int binSize = m->getNumNames(data[i]);
sav.set(binSize, sav.get(binSize) + 1);
}
sav.set(0, 0);
OrderVector ov;
for(int i=0;i<data.size();i++){
- int binSize = getNumNames(data[i]);
+ int binSize = m->getNumNames(data[i]);
for(int j=0;j<binSize;j++){
ov.push_back(i);
}