private:
vector<string> names, outputNames;
- string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;
+ string fastafile, namefile, groupfile, countfile, alignfile, inputFileName, outputDir, listfile, taxfile;
bool abort;
int readFasta();
int readAlign();
int readList();
int readTax();
+ int readCount();
};