private:
vector<string> names;
- string fastafile, namefile, groupfile, alignfile, inputFileName;
+ string fastafile, namefile, groupfile, alignfile, inputFileName, outputDir, listfile, taxfile;
bool abort;
- void readFasta();
- void readName();
- void readGroup();
- void readAlign();
+ int readFasta();
+ int readName();
+ int readGroup();
+ int readAlign();
+ int readList();
+ int readTax();
};