//ofstream out;
//string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
//m->openOutputFile(newFastaName, out);
- //int count = 1;
+ int count = 1;
//string lastName = "";
while(!in.eof()){
if (name != "") { names.push_back(name); }
m->gobble(in);
- //count++;
+ if (m->debug) { count++; cout << "[DEBUG]: count = " + toString(count) + ", name = " + currSeq.getName() + "\n"; }
}
in.close();
//out.close();