fixed indicator grouping problem

[mothur.git] / listseqscommand.cpp

diff --git a/listseqscommand.cpp b/listseqscommand.cpp
index c8c82971a1cf53d0eb2ba4834c281cc310d8984b..1488cdadac766b243252e87053a0132975961884 100644 (file)
--- a/listseqscommand.cpp
+++ b/listseqscommand.cpp
@@ -26,6 +26,7 @@ vector<string> ListSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 ListSeqsCommand::ListSeqsCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["accnos"] = tempOutNames;
@@ -366,7 +367,7 @@ int ListSeqsCommand::readGroup(){
                        
                        if (m->control_pressed) { in.close(); return 0; }
                        
-                       in >> name;                             //read from first column
+                       in >> name;     m->gobble(in);                  //read from first column
                        in >> group;                    //read from second column
                        
                        names.push_back(name);