*/
#include "command.hpp"
+#include "fullmatrix.h"
+#include "libshuff.h"
using namespace std;
public:
LibShuffCommand();
- ~LibShuffCommand();
+ ~LibShuffCommand(){};
int execute();
private:
- GlobalData* globaldata;
+ vector<string> groupNames;
+ void setGroups();
+ void printCoverageFile();
+ void printSummaryFile();
+
+ GlobalData* globaldata;
+ FullMatrix* matrix;
+ Libshuff* form;
+ float cutOff, step;
+ int numGroups, numComp, iters;
+ string coverageFile, summaryFile;
+ vector<vector<int> > pValueCounts;
+ vector<vector<double> > savedDXYValues;
+ vector<vector<vector<double> > > savedMinValues;
};
#endif