string temp;
temp = validParameter.validFile(parameters, "iters", false); if (temp == "not found") { temp = "10000"; }
- convert(temp, iters);
+ m->mothurConvert(temp, iters);
temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "1.0"; }
- convert(temp, cutOff);
+ m->mothurConvert(temp, cutOff);
temp = validParameter.validFile(parameters, "step", false); if (temp == "not found") { temp = "0.01"; }
- convert(temp, step);
+ m->mothurConvert(temp, step);
temp = validParameter.validFile(parameters, "sim", false); if (temp == "not found") { temp = "F"; }
sim = m->isTrue(temp);