Libshuff::Libshuff(FullMatrix* D, int it, float step, float co) : matrix(D), iters(it), stepSize(step), cutOff(co){
try{
+ m = MothurOut::getInstance();
groupNames = matrix->getGroups();
groupSizes = matrix->getSizes();
numGroups = matrix->getNumGroups();
initializeGroups(matrix);
}
catch(exception& e) {
- errorOut(e, "Libshuff", "Libshuff");
+ m->errorOut(e, "Libshuff", "Libshuff");
exit(1);
}
}
}
}
catch(exception& e) {
- errorOut(e, "Libshuff", "initializeGroups");
+ m->errorOut(e, "Libshuff", "initializeGroups");
exit(1);
}
}
vector<double> Libshuff::getMinX(int x){
try{
-
vector<double> minX(groupSizes[x], 0);
for(int i=0;i<groupSizes[x];i++){
minX[i] = (groupSizes[x] > 1 ? (i==0 ? matrix->get(groups[x][0], groups[x][1]) : matrix->get(groups[x][i], groups[x][0])) : 0.0); //get the first value in row i of this block
return minX;
}
catch(exception& e) {
- errorOut(e, "Libshuff", "getMinX");
+ m->errorOut(e, "Libshuff", "getMinX");
exit(1);
}
}
return minXY;
}
catch(exception& e) {
- errorOut(e, "Libshuff", "getMinXY");
+ m->errorOut(e, "Libshuff", "getMinXY");
exit(1);
}
}
for(int k=0;k<groupSizes[y];k++) { groups[y][k]=v[index++]; }
}
catch(exception& e) {
- errorOut(e, "Libshuff", "randomizeGroups");
+ m->errorOut(e, "Libshuff", "randomizeGroups");
exit(1);
}
}