string getOutputPattern(string);
string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Lefse"; }
+ string getCitation() { return "Segata, N., J. Izard, L. Waldron, D. Gevers, L. Miropolsky, W. S. Garrett, and C. Huttenhower. 2011. Metagenomic biomarker discovery and explanation. Genome Biol 12:R60, http://www.mothur.org/wiki/Lefse"; }
string getDescription() { return "brief description"; }
int execute();
private:
bool abort, allLines, wilc, wilcsamename, curv, subject, normMillion;
- string outputDir, sharedfile, designfile, mclass, subclass, classes, rankTec, multiClassStrat;
+ string outputDir, sharedfile, designfile, mclass, subclass, rankTec, multiClassStrat;
vector<string> outputNames;
set<string> labels;
double anovaAlpha, wilcoxonAlpha, fBoots, ldaThreshold;